SNP-o-matic Tool name | SNP-o-matic |
---|
URL | http://snpomatic.sourceforge.net/ |
---|
Important features | 1. It is used for the analysis of Solexa reads and compares to the references sequence to find the known SNPs.
2. It is a stringent read mapping tool using indexing algorithm. |
---|
Citations | Manske HM, Kwiatkowski DP. SNP-o-matic. Bioinformatics. 2009 Sep 15;25(18):2434-5. Epub 2009 Jul 2. PubMed PMID: 19574284; PubMed Central PMCID:
PMC2735664. |
---|
Year of publication | 2009 |
---|
Rank by usage frequency | 100 |
---|
Comments | |
---|
Function | SNP discovery |
---|
Category | Downloadable |
---|
License | |
---|
Status | |
---|
Input file format | FASTA, FASTQ |
---|
Output file format | Pileup, CIGAR, GFF, SAM |
---|
Operating system | |
---|
Operating language | C++, C |
---|
Platform | Illumina/Solexa |
---|
Maintained by | |
---|
Downloadable file format | |
---|
Submission file format | |
---|
| |